What is an Anticodon?


Anticodons are sequences of nucleotides that are complementary to codons. They are found in tRNAs and allow the tRNAs to bring the correct amino acid in line with an mRNA during protein production.

During protein production, amino acids are bound together into a string, much like beads on a necklace. It’s important that the correct amino acids be used in the correct places, because amino acids have different properties. Putting the wrong one in a spot can render a protein useless, or even dangerous to the cell.

This graphic shows a growing protein chain. Towards the bottom left, you can see tRNAs carrying amino acids entering the ribosome complex. If all goes well, only the tRNAs with the correct anticodons will bind successfully to the exposed mRNA, so only the correct amino acids will be added:


tRNAs are responsible for bringing the correct amino acids to be added to the protein, according to the mRNA’s instructions. Their anticodons, which pair-bond with codons on mRNA, allow them to perform this function.

Function of Anticodons

The function of anticodons is to bring together the correct amino acids to create a protein, based on the instructions carried in mRNA.

Each tRNA carries one amino acid, and has one anticodon. When the anticodon successfully pairs up with an mRNA codon, the cellular machinery knows that the correct amino acid is in place to be added to the growing protein.

Anticodons are necessary to complete the process of turning the information stored in DNA into functional proteins that a cell can use to carry out its life functions.

How Anticodons Work

When genetic information is to be turned into a protein, the sequence of events goes like this:

Genetic information in the cell’s genome is transcribed into mobile pieces of RNA using base-pairing rules. Each nucleotide has only one other nucleotide which pairs up with it.

By pairing the correct RNA nucleotide with each DNA nucleotide, RNA polymerase creates a strand of RNA that contains all the correct information to make the protein.

This “messenger RNA,” or “mRNA,” then travels to a ribosome, the site of protein production.

At the ribosome, the rules of base-pairing are again used to ensure a correct transfer of information. Each three-nucleotide “codon” in the mRNA is matched with an “anticodon” containing the complementary bases.

The “transfer RNAs” or “tRNAs” that string proteins together each have one anticodon that corresponds to one mRNA codon, and one amino acid attached.

When the correct tRNA finds the mRNA, its amino acid is added to the growing protein chain.

Enzymes catalyze the bonding of amino acids together as tRNA anticodons bind to the correct mRNA codon.

When the tRNA’s amino acid has been added to the protein chain, the tRNA leaves to pick up a new amino acid to bring to a new mRNA.

Interestingly, this means that the tRNA anticodon has the RNA version of the same nucleotide sequence of the original gene.

Remember – the gene was transcribed using complementary nucleotides to make RNA, which then had to bond with complementary tRNA codons.

RNA Base Pairing Rules

Each RNA nucleotide can only hydrogen bond to one other nucleotide. It is by bonding the correct nucleotides together that DNA and RNA successfully transfer and use information.

The four bases of RNA are Adenine, Cytosine, Guanine, and Uracil. These bases are often referred to by just their first letter, to make it easier to show sequences of many bases. Base pairing rules for RNA are:

  • A – U
  • C – G
  • G – C
  • U – A

Put more simply, in RNA, A nucleotides always bond with U nucleotides, and C nucleotides always bond with G nucleotides.

Differences Between RNA and DNA

Of note, in DNA, the “Uracil” base is a slightly different base called “Thymine.” In DNA, A and T pair. RNA Adenine will also pair with DNA’s Thymine, and DNA Adenine will pair with RNA’s Uracil.

The difference between Uracil and Thymine is that Thymine has an extra methyl group, which makes it more stable than Uracil.

It is thought that DNA uses Thymine instead of Uracil because, as the cell’s “master blueprints,” information stored in DNA must remain stable over a long period of time. RNAs are only copies of DNA made for specific purposes, and are used by the cell for only a short period of time before being discarded.